STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCAF8SR-related CTD associated factor 8. (1071 aa)    
Predicted Functional Partners:
SETX
Senataxin.
   
 
 0.930
H3A8J5_LATCH
Uncharacterized protein.
   
 
 0.793
POLR2A
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.793
TENT4B
Terminal nucleotidyltransferase 4B.
    
 
 0.768
TRANK1
Tetratricopeptide repeat and ankyrin repeat containing 1.
   
 
 0.719
PCF11
PCF11 cleavage and polyadenylation factor subunit.
   
 
0.701
TMEM242
Transmembrane protein 242.
      
 0.692
SERAC1
Serine active site containing 1.
      
 0.685
TAF2
TATA-box binding protein associated factor 2.
   
    0.643
RNMT
mRNA cap guanine-N7 methyltransferase.
   
 
 0.638
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.