Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC102364679Centrin 4. (174 aa)    
Predicted Functional Partners:
XPC
XPC complex subunit, DNA damage recognition and repair factor.
    
 0.996
H3BBT7_LATCH
Uncharacterized protein.
    
 0.982
POC5
POC5 centriolar protein homolog (Chlamydomonas).
    
 
 0.980
PLK1
Serine/threonine-protein kinase PLK.
    
 0.960
CCP110
Centriolar coiled-coil protein 110.
    
 0.935
USP44
Ubiquitin carboxyl-terminal hydrolase.
   
 
 0.924
CEP164
Centrosomal protein 164.
    
 0.919
ERCC3
ERCC excision repair 3, TFIIH core complex helicase subunit.
    
 0.917
XPA
XPA, DNA damage recognition and repair factor.
    
 0.887
CFAP43
Cilia and flagella associated protein 43.
    
 
 0.882
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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