Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H2ZW47_LATCHUncharacterized protein. (304 aa)    
Predicted Functional Partners:
PHF6
PHD finger protein 6.
  
  
 
0.903
ASH2L
ASH2 like, histone lysine methyltransferase complex subunit.
    
 0.645
RBBP5
RB binding protein 5, histone lysine methyltransferase complex subunit.
   
 0.640
LYAR
Ly1 antibody reactive.
   
 
 0.614
SETBP1
SET binding protein 1.
   
 
 0.561
CREBBP
CREB binding protein.
   
 0.549
SUZ12
SUZ12 polycomb repressive complex 2 subunit.
   
 0.545
RBBP7
WD_REPEATS_REGION domain-containing protein.
   
 0.536
LOC102347269
Retinoblastoma binding protein 4, like.
   
 0.536
RBBP4
RB binding protein 4, chromatin remodeling factor.
   
 0.536
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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