STRINGSTRING
PPAN protein (Latimeria chalumnae) - STRING interaction network
"PPAN" - Uncharacterized protein in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PPANUncharacterized protein (470 aa)    
Predicted Functional Partners:
RBM28
RNA binding motif protein 28 (559 aa)
     
      0.994
PES1
Pescadillo ribosomal biogenesis factor 1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome (584 aa)
     
 
  0.954
EBNA1BP2
EBNA1 binding protein 2 (146 aa)
     
 
  0.950
RPF1
Ribosome production factor 1 homolog (S. cerevisiae) (375 aa)
     
 
  0.937
KRI1
KRI1 homolog (S. cerevisiae) (685 aa)
     
        0.933
FTSJ3
FtsJ homolog 3 (E. coli) (710 aa)
     
        0.933
RRP15
Ribosomal RNA processing 15 homolog (S. cerevisiae) (291 aa)
     
 
  0.922
SURF6
Surfeit 6 (344 aa)
     
 
  0.909
TOP1
Topoisomerase (DNA) I (743 aa)
     
      0.897
RRS1
RRS1 ribosome biogenesis regulator homolog (S. cerevisiae) (329 aa)
     
 
  0.891
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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