STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2ZW61_LATCHUncharacterized protein. (800 aa)    
Predicted Functional Partners:
KRIT1
KRIT1 ankyrin repeat containing.
    
 
 0.939
LOC102350871
Uncharacterized protein.
   
 0.772
H3B8Y7_LATCH
Uncharacterized protein.
   
 0.727
CCM2
CCM2 scaffold protein.
   
  
 0.641
GALNT14
Polypeptide N-acetylgalactosaminyltransferase.
    
 0.635
H2ZSU9_LATCH
Uncharacterized protein.
    
 0.634
ADGB
Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.
    
 
 0.585
LOC102359917
SEA domain-containing protein.
   
 
 0.582
B3GNT5
Hexosyltransferase.
   
 
 0.572
RPA1
Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.
    
 
 0.561
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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