Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CTSCCathepsin C; Belongs to the peptidase C1 family. (461 aa)    
Predicted Functional Partners:
BCL2L1
BCL2 like 1.
     
 0.940
LGMN
Legumain.
   
 
 0.720
CTSD
Cathepsin D; Belongs to the peptidase A1 family.
   
 0.674
LOC102346472
Uncharacterized protein.
     
 0.673
BIRC5
Baculoviral IAP repeat containing 5.
     
 0.673
CHCHD7
Coiled-coil-helix-coiled-coil-helix domain containing 7.
      
 0.672
LMAN1
Lectin, mannose binding 1.
     
 0.670
BIRC2
Baculoviral IAP repeat containing 2.
     
  0.650
LOC102355307
Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.
   
 0.642
MCFD2
Multiple coagulation factor deficiency 2.
     
 0.620
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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