STRINGSTRING
CCDC90A protein (Latimeria chalumnae) - STRING interaction network
"CCDC90A" - Coiled-coil domain containing 90A in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCDC90ACoiled-coil domain containing 90A (382 aa)    
Predicted Functional Partners:
EFHA2
EF-hand domain family, member A2 (498 aa)
     
   
  0.482
MICU1
Mitochondrial calcium uptake 1 (499 aa)
     
   
  0.480
MYLK3
Myosin light chain kinase 3 (797 aa)
     
   
  0.459
MYLK4
Myosin light chain kinase family, member 4 (460 aa)
     
   
  0.459
SURF4
Surfeit 4 (272 aa)
     
      0.452
ENSLACG00000009734
Uncharacterized protein (274 aa)
     
      0.452
HS2ST1
Heparan sulfate 2-O-sulfotransferase 1 (347 aa)
           
  0.432
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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