STRINGSTRING
TRUB2 protein (Latimeria chalumnae) - STRING interaction network
"TRUB2" - TruB pseudouridine in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRUB2TruB pseudouridine (psi) synthase homolog 2 (E. coli) (337 aa)    
Predicted Functional Partners:
YARS2
tyrosyl-tRNA synthetase 2, mitochondrial (463 aa)
     
      0.592
RPUSD2
RNA pseudouridylate synthase domain containing 2; Responsible for synthesis of pseudouridine from uracil (456 aa)
     
   
  0.487
RPUSD1
RNA pseudouridylate synthase domain containing 1 (302 aa)
     
   
  0.485
THUMPD2
THUMP domain containing 2 (240 aa)
           
  0.479
QTRTD1
Queuine tRNA-ribosyltransferase domain containing 1 (337 aa)
           
  0.479
GTPBP3
GTP binding protein 3 (mitochondrial) (522 aa)
           
  0.478
DKC1
Dyskeratosis congenita 1, dyskerin (506 aa)
     
   
  0.468
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
Server load: low (9%) [HD]