Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FKBP10Peptidylprolyl isomerase. (450 aa)    
Predicted Functional Partners:
GRIN3A
Glutamate ionotropic receptor NMDA type subunit 3A.
      
 0.922
COL6A2
Collagen type VI alpha 2 chain.
   
 
 0.893
PRRX2
Paired related homeobox 2.
   
  
 0.873
TMEM38B
Transmembrane protein 38B.
      
 0.867
PRRX1
Paired related homeobox 1.
   
  
 0.845
POSTN
Periostin.
   
  
 0.838
TIMP2
TIMP metallopeptidase inhibitor 2.
   
  
 0.837
NUDCD1
NudC domain containing 1.
    
   0.819
TGFB3
Transforming growth factor beta; Belongs to the TGF-beta family.
   
 0.811
SERPINH1
Serpin family H member 1; Belongs to the serpin family.
   
 
 0.804
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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