STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GDPD5Glycerophosphodiester phosphodiesterase domain containing 5. (334 aa)    
Predicted Functional Partners:
TBRG1
Transforming growth factor beta regulator 1.
      
 0.802
ACER3
Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid.
   
  
 0.744
P2RY6
Pyrimidinergic receptor P2Y6; Belongs to the G-protein coupled receptor 1 family.
   
  
 0.721
TSKU
Tsukushi, small leucine rich proteoglycan.
      
 0.701
GPD2
Glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
  
 0.693
FCHSD2
Uncharacterized protein.
      
 0.691
P2RY2
Purinergic receptor P2Y2; Belongs to the G-protein coupled receptor 1 family.
      
 0.672
USP25
Ubiquitin specific peptidase 25; Belongs to the peptidase C19 family.
   
  
 0.667
HSPA13
Heat shock protein family A (Hsp70) member 13.
      
 0.652
L2HGDH
L-2-hydroxyglutarate dehydrogenase.
    
 0.594
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.