STRINGSTRING
PTBP2 protein (Latimeria chalumnae) - STRING interaction network
"PTBP2" - Polypyrimidine tract binding protein 2 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTBP2Polypyrimidine tract binding protein 2 (535 aa)    
Predicted Functional Partners:
SRSF3
Serine/arginine-rich splicing factor 3 (171 aa)
     
 
  0.753
SRSF6
Serine/arginine-rich splicing factor 6 (338 aa)
     
  0.723
SRSF1
Serine/arginine-rich splicing factor 1 (266 aa)
     
  0.712
PAPOLA
Uncharacterized protein (735 aa)
     
 
  0.710
PAPOLG
poly(A) polymerase gamma (743 aa)
     
 
  0.710
HNRNPD
Heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa) (309 aa)
     
  0.709
HNRPDL
Heterogeneous nuclear ribonucleoprotein D-like (172 aa)
     
  0.709
SRSF9
Serine/arginine-rich splicing factor 9 (225 aa)
     
  0.705
ELAVL2
ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) (387 aa)
     
  0.699
SNRPA
Small nuclear ribonucleoprotein polypeptide A (279 aa)
     
  0.697
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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