Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC102354258Si:ch211-246m6.4. (181 aa)    
Predicted Functional Partners:
MEOX1
Mesenchyme homeobox 1.
    
 
 0.475
MKX
Mohawk homeobox.
    
 
 0.453
TCF4
Transcription factor 4.
    
 0.420
TCF12
Transcription factor 12.
    
 0.420
TCF3
Transcription factor 3.
    
 0.420
LDB1
LIM domain binding 1.
    
  0.401
LDB2
LIM domain binding 2.
    
  0.401
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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