STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQSEC3IQ motif and Sec7 domain 3. (883 aa)    
Predicted Functional Partners:
INSYN1
Inhibitory synaptic factor 1.
      
 0.791
RBM43
NID domain-containing protein.
      
 0.685
RBFOX3
RNA binding protein fox-1 homolog 3; RNA-binding protein that regulates alternative splicing events.
   
 
 0.661
ARF6
ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.
   
 
 0.652
LOC102349333
Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.
   
 
 0.652
MYCBP2
MYC binding protein 2.
      
 0.629
CABP7
Calcium binding protein 7.
    
 
 0.613
PPM1E
Protein phosphatase, Mg2+/Mn2+ dependent 1E.
      
 0.594
SUPT5H
Transcription elongation factor SPT5.
      
 0.593
NEURL1
Neuralized E3 ubiquitin protein ligase 1.
      
 0.580
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.