Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC102349269THAP-type domain-containing protein. (747 aa)    
Predicted Functional Partners:
LOC102361553
Si:dkey-118k5.3.
    
 
 0.662
H3B3Q3_LATCH
Uncharacterized protein.
    
 
 0.662
TRIM16
Tripartite motif containing 16.
      
 0.657
H3ANY4_LATCH
NACHT domain-containing protein.
    
 
 0.563
DNAJC3
DnaJ heat shock protein family (Hsp40) member C3.
    
 0.482
SAMHD1
Uncharacterized protein.
      
 0.480
TRIM8
Tripartite motif containing 8.
     
 0.460
ZNF106
Zinc finger protein 106.
  
 
   0.435
IRF6
Interferon regulatory factor 6.
     
 0.402
CASP6
Caspase 6; Belongs to the peptidase C14A family.
     
 0.400
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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