STRINGSTRING
SCFD1 protein (Latimeria chalumnae) - STRING interaction network
"SCFD1" - Sec1 family domain containing 1 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCFD1Sec1 family domain containing 1 (632 aa)    
Predicted Functional Partners:
STX5
Syntaxin 5 (350 aa)
     
  0.992
NSF
N-ethylmaleimide-sensitive factor (744 aa)
     
  0.982
GOSR2
Golgi SNAP receptor complex member 2 (213 aa)
     
  0.982
USO1
USO1 vesicle docking protein homolog (yeast) (980 aa)
     
  0.978
BET1L
Blocked early in transport 1 homolog (S. cerevisiae)-like (112 aa)
     
  0.973
SEC22B
Uncharacterized protein (215 aa)
     
  0.968
GOSR1
Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide- sensitive factor) attachment protein receptor (250 aa)
     
 
  0.966
STX18
Syntaxin 18 (329 aa)
     
 
  0.962
YKT6
YKT6 v-SNARE homolog (S. cerevisiae) (199 aa)
     
  0.962
ENSLACG00000005244
Uncharacterized protein (216 aa)
     
  0.957
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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