STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADAMTS18ADAM metallopeptidase with thrombospondin type 1 motif 18. (1173 aa)    
Predicted Functional Partners:
SALL4
Spalt like transcription factor 4.
   
  
 0.706
HIVEP3
Human immunodeficiency virus type I enhancer binding protein 3.
      
 0.700
GPR84
G_PROTEIN_RECEP_F1_2 domain-containing protein.
      
 0.695
USH1C
USH1 protein network component harmonin.
      
 0.695
IRX3
Iroquois homeobox 3.
   
  
 0.687
B3GLCT
Beta 3-glucosyltransferase.
    
 0.608
SELENOS
Selenoprotein S.
      
 0.567
CCDC51
Coiled-coil domain containing 51.
      
 0.553
HIVEP2
Human immunodeficiency virus type I enhancer binding protein 2.
      
 0.543
POFUT2
Protein O-fucosyltransferase 2.
     
 0.513
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.