LOC102363240 protein (Latimeria chalumnae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC102363240

Flavin-containing monooxygenase. (435 aa)

Predicted Functional Partners:

LOC102358421

0.541

VASP

0.526

CS

0.486

COQ3

0.474

ATP5MG

0.474

ATP5PB

0.468

ATP5F1C

0.463

COQ6

0.456

ATP5F1D

0.440

PMS2

0.440

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATP5F1C	ATP5F1D	ENSLACP00000009903	ENSLACP00000011028	ATP synthase F1 subunit gamma.	ATP synthase F1 subunit delta.	0.999
ATP5F1C	ATP5MG	ENSLACP00000009903	ENSLACP00000020691	ATP synthase F1 subunit gamma.	ATP synthase subunit; Mitochondrial membrane ATP synthase (F1F0 ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F1 - containing the extramembraneous catalytic core, and F0 - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F1 is coupled via a rotary mechanism of the central stalk subunits to proto [...]	0.999
ATP5F1C	ATP5PB	ENSLACP00000009903	ENSLACP00000021148	ATP synthase F1 subunit gamma.	ATP synthase peripheral stalk-membrane subunit b.	0.999
ATP5F1C	CS	ENSLACP00000009903	ENSLACP00000021587	ATP synthase F1 subunit gamma.	Citrate synthase; Belongs to the citrate synthase family.	0.876
ATP5F1C	LOC102363240	ENSLACP00000009903	ENSLACP00000001837	ATP synthase F1 subunit gamma.	Flavin-containing monooxygenase.	0.463
ATP5F1D	ATP5F1C	ENSLACP00000011028	ENSLACP00000009903	ATP synthase F1 subunit delta.	ATP synthase F1 subunit gamma.	0.999
ATP5F1D	ATP5MG	ENSLACP00000011028	ENSLACP00000020691	ATP synthase F1 subunit delta.	ATP synthase subunit; Mitochondrial membrane ATP synthase (F1F0 ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F1 - containing the extramembraneous catalytic core, and F0 - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F1 is coupled via a rotary mechanism of the central stalk subunits to proto [...]	0.999
ATP5F1D	ATP5PB	ENSLACP00000011028	ENSLACP00000021148	ATP synthase F1 subunit delta.	ATP synthase peripheral stalk-membrane subunit b.	0.999
ATP5F1D	CS	ENSLACP00000011028	ENSLACP00000021587	ATP synthase F1 subunit delta.	Citrate synthase; Belongs to the citrate synthase family.	0.520
ATP5F1D	LOC102363240	ENSLACP00000011028	ENSLACP00000001837	ATP synthase F1 subunit delta.	Flavin-containing monooxygenase.	0.440
ATP5MG	ATP5F1C	ENSLACP00000020691	ENSLACP00000009903	ATP synthase subunit; Mitochondrial membrane ATP synthase (F1F0 ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F1 - containing the extramembraneous catalytic core, and F0 - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F1 is coupled via a rotary mechanism of the central stalk subunits to proto [...]	ATP synthase F1 subunit gamma.	0.999
ATP5MG	ATP5F1D	ENSLACP00000020691	ENSLACP00000011028	ATP synthase subunit; Mitochondrial membrane ATP synthase (F1F0 ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F1 - containing the extramembraneous catalytic core, and F0 - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F1 is coupled via a rotary mechanism of the central stalk subunits to proto [...]	ATP synthase F1 subunit delta.	0.999
ATP5MG	ATP5PB	ENSLACP00000020691	ENSLACP00000021148	ATP synthase subunit; Mitochondrial membrane ATP synthase (F1F0 ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F1 - containing the extramembraneous catalytic core, and F0 - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F1 is coupled via a rotary mechanism of the central stalk subunits to proto [...]	ATP synthase peripheral stalk-membrane subunit b.	0.999
ATP5MG	LOC102363240	ENSLACP00000020691	ENSLACP00000001837	ATP synthase subunit; Mitochondrial membrane ATP synthase (F1F0 ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F1 - containing the extramembraneous catalytic core, and F0 - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F1 is coupled via a rotary mechanism of the central stalk subunits to proto [...]	Flavin-containing monooxygenase.	0.474
ATP5PB	ATP5F1C	ENSLACP00000021148	ENSLACP00000009903	ATP synthase peripheral stalk-membrane subunit b.	ATP synthase F1 subunit gamma.	0.999
ATP5PB	ATP5F1D	ENSLACP00000021148	ENSLACP00000011028	ATP synthase peripheral stalk-membrane subunit b.	ATP synthase F1 subunit delta.	0.999
ATP5PB	ATP5MG	ENSLACP00000021148	ENSLACP00000020691	ATP synthase peripheral stalk-membrane subunit b.	ATP synthase subunit; Mitochondrial membrane ATP synthase (F1F0 ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F1 - containing the extramembraneous catalytic core, and F0 - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F1 is coupled via a rotary mechanism of the central stalk subunits to proto [...]	0.999
ATP5PB	CS	ENSLACP00000021148	ENSLACP00000021587	ATP synthase peripheral stalk-membrane subunit b.	Citrate synthase; Belongs to the citrate synthase family.	0.764
ATP5PB	LOC102363240	ENSLACP00000021148	ENSLACP00000001837	ATP synthase peripheral stalk-membrane subunit b.	Flavin-containing monooxygenase.	0.468
COQ3	COQ6	ENSLACP00000013776	ENSLACP00000020923	Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.	Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial; FAD-dependent monooxygenase required for the C5-ring hydroxylation during ubiquinone biosynthesis. Catalyzes the hydroxylation of 3-polyprenyl-4-hydroxybenzoic acid to 3-polyprenyl- 4,5-dihydroxybenzoic acid. The electrons required for the hydroxylation reaction may be funneled indirectly from NADPH via a ferredoxin/ferredoxin reductase system to COQ6.	0.999