STRINGSTRING
USP1 protein (Latimeria chalumnae) - STRING interaction network
"USP1" - Ubiquitin specific peptidase 1 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP1Ubiquitin specific peptidase 1 (739 aa)    
Predicted Functional Partners:
WDR48
WD repeat domain 48 (677 aa)
     
  0.992
DMWD
Uncharacterized protein (595 aa)
     
  0.939
WDR20
WD repeat domain 20 (594 aa)
     
  0.939
FANCL
Fanconi anemia, complementation group L (367 aa)
     
 
  0.939
KXD1
Ubiquitin A-52 residue ribosomal protein fusion product 1 (231 aa)
       
  0.939
UBA52
Uncharacterized protein (128 aa)
       
  0.899
HIP1
Huntingtin interacting protein 1 (1004 aa)
       
      0.791
HIP1R
Huntingtin interacting protein 1 related (1039 aa)
       
      0.791
FANCD2
Fanconi anemia, complementation group D2 (1462 aa)
     
  0.739
FANCI
Fanconi anemia, complementation group I (1338 aa)
     
 
  0.703
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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