STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H2ZWS3_LATCHDBF4-type domain-containing protein. (385 aa)    
Predicted Functional Partners:
SENP6
SUMO specific peptidase 6.
    
   0.960
LGI3
Leucine rich repeat LGI family member 3.
     
 0.721
LGI2
Leucine rich repeat LGI family member 2.
     
 0.713
PRPF19
Pre-mRNA processing factor 19.
    
   0.709
LGI1
Leucine rich glioma inactivated 1.
     
 0.637
RRP12
Ribosomal RNA processing 12 homolog.
      
 0.588
GPR1
G protein-coupled receptor 1.
      
 0.586
NHLRC1
NHL repeat containing E3 ubiquitin protein ligase 1.
      
 0.579
MEST
Mesoderm specific transcript.
      
 0.523
TSR1
TSR1 ribosome maturation factor.
      
 0.522
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.