NRCAM protein (Latimeria chalumnae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

NRCAM

Neuronal cell adhesion molecule. (1302 aa)

Predicted Functional Partners:

CNTN1

0.974

CNTN2

0.803

NRP1

0.750

CNTN3

0.650

CNTN5

0.650

CNTN4

0.650

FAM151B

0.646

NRP2

0.640

NFASC

0.636

GLDN

0.612

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CNTN1	CNTN5	ENSLACP00000004074	ENSLACP00000010508	Contactin 1.	Contactin 5.	0.417
CNTN1	FAM151B	ENSLACP00000004074	ENSLACP00000022796	Contactin 1.	Family with sequence similarity 151 member B.	0.497
CNTN1	GLDN	ENSLACP00000004074	ENSLACP00000011452	Contactin 1.	Gliomedin.	0.433
CNTN1	NFASC	ENSLACP00000004074	ENSLACP00000016880	Contactin 1.	Neurofascin.	0.918
CNTN1	NRCAM	ENSLACP00000004074	ENSLACP00000001854	Contactin 1.	Neuronal cell adhesion molecule.	0.974
CNTN1	NRP1	ENSLACP00000004074	ENSLACP00000023533	Contactin 1.	Neuropilin; Belongs to the neuropilin family.	0.444
CNTN2	FAM151B	ENSLACP00000015722	ENSLACP00000022796	Contactin 2.	Family with sequence similarity 151 member B.	0.497
CNTN2	NFASC	ENSLACP00000015722	ENSLACP00000016880	Contactin 2.	Neurofascin.	0.906
CNTN2	NRCAM	ENSLACP00000015722	ENSLACP00000001854	Contactin 2.	Neuronal cell adhesion molecule.	0.803
CNTN2	NRP1	ENSLACP00000015722	ENSLACP00000023533	Contactin 2.	Neuropilin; Belongs to the neuropilin family.	0.528
CNTN3	FAM151B	ENSLACP00000004250	ENSLACP00000022796	Contactin 3.	Family with sequence similarity 151 member B.	0.497
CNTN3	NFASC	ENSLACP00000004250	ENSLACP00000016880	Contactin 3.	Neurofascin.	0.650
CNTN3	NRCAM	ENSLACP00000004250	ENSLACP00000001854	Contactin 3.	Neuronal cell adhesion molecule.	0.650
CNTN3	NRP1	ENSLACP00000004250	ENSLACP00000023533	Contactin 3.	Neuropilin; Belongs to the neuropilin family.	0.444
CNTN4	FAM151B	ENSLACP00000014153	ENSLACP00000022796	Contactin 4.	Family with sequence similarity 151 member B.	0.497
CNTN4	NFASC	ENSLACP00000014153	ENSLACP00000016880	Contactin 4.	Neurofascin.	0.650
CNTN4	NRCAM	ENSLACP00000014153	ENSLACP00000001854	Contactin 4.	Neuronal cell adhesion molecule.	0.650
CNTN4	NRP1	ENSLACP00000014153	ENSLACP00000023533	Contactin 4.	Neuropilin; Belongs to the neuropilin family.	0.444
CNTN5	CNTN1	ENSLACP00000010508	ENSLACP00000004074	Contactin 5.	Contactin 1.	0.417
CNTN5	FAM151B	ENSLACP00000010508	ENSLACP00000022796	Contactin 5.	Family with sequence similarity 151 member B.	0.497