STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FNDC3AFibronectin type III domain containing 3A. (1198 aa)    
Predicted Functional Partners:
EXTL3
Exostosin like glycosyltransferase 3; Belongs to the glycosyltransferase 47 family.
     
 0.739
EXT2
Exostosin glycosyltransferase 2; Belongs to the glycosyltransferase 47 family.
     
 0.728
SP9
Sp9 transcription factor.
     
 0.702
SALL4
Spalt like transcription factor 4.
      
 0.607
TATDN2
Uncharacterized protein.
      
 0.585
CDADC1
Cytidine and dCMP deaminase domain containing 1.
      
 0.578
ITM2B
Integral membrane protein 2B.
    
 
 0.569
FAF1
Fas associated factor 1.
     
 0.498
ELAVL4
ELAV-like protein; Belongs to the RRM elav family.
      
 0.475
SETDB2
SET domain bifurcated histone lysine methyltransferase 2.
     
 0.475
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.