STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF123RING-type domain-containing protein. (667 aa)    
Predicted Functional Partners:
LOC102353140
Ring finger protein 123.
 
     0.947
USP19
Ubiquitin specific peptidase 19.
   
 0.836
UBAC1
UBA domain containing 1.
   
 
 0.801
CNNM3
Cyclin and CBS domain divalent metal cation transport mediator 3.
      
 0.767
USP11
Ubiquitin specific peptidase 11.
   
 0.712
PAPPA
Uncharacterized protein.
    
 
 0.575
LOC102356738
USP domain-containing protein; Belongs to the peptidase C19 family.
   
 0.508
USP31
Ubiquitin specific peptidase 31; Belongs to the peptidase C19 family.
   
 0.508
USP15
Ubiquitin carboxyl-terminal hydrolase.
   
 0.508
USP4
Ubiquitin specific peptidase 4; Belongs to the peptidase C19 family.
   
 0.508
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.