STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2ZWV6_LATCHMultidrug and toxin extrusion protein; Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family. (494 aa)    
Predicted Functional Partners:
HSD17B10
Hydroxysteroid 17-beta dehydrogenase 10; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 0.807
FDFT1
Farnesyl-diphosphate farnesyltransferase 1.
   
 
 0.748
TRMT10C
tRNA methyltransferase 10C, mitochondrial RNase P subunit.
   
 0.700
TRMT10A
tRNA methyltransferase 10A.
   
 0.700
GAPDHS
Glyceraldehyde-3-phosphate dehydrogenase.
  
  
 0.600
GAPDH
Glyceraldehyde-3-phosphate dehydrogenase.
  
  
 0.600
NDUFAF6
NADH:ubiquinone oxidoreductase complex assembly factor 6.
   
 
 0.589
H3ADE2_LATCH
Uncharacterized protein.
   
 
 0.589
TBPL1
TATA-box binding protein like 1.
   
  
 0.567
TBP
TATA-box binding protein.
   
  
 0.567
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.