STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2ZWW7_LATCHNACHT domain-containing protein. (1035 aa)    
Predicted Functional Partners:
LOC102349920
Uncharacterized protein.
   
 0.563
TXNIP
Thioredoxin interacting protein.
    
 0.519
WDR90
WD repeat domain 90.
   
 0.495
SUGT1
SGT1 homolog, MIS12 kinetochore complex assembly cochaperone.
    
  0.469
LOC102354290
Uncharacterized protein.
    
   0.458
LOC102363742
Uncharacterized protein; Belongs to the peptidase C14A family.
   
 0.455
RPS27A
Ribosomal protein S27a.
    
  0.445
RIPK2
Receptor interacting serine/threonine kinase 2.
   
 0.441
BRCC3
BRCA1/BRCA2-containing complex subunit 3.
    
  0.441
LOC102348796
Uncharacterized protein.
   
 0.441
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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