STRINGSTRING
ENSLACG00000001688 protein (Latimeria chalumnae) - STRING interaction network
"ENSLACG00000001688" - Protein CLEC16A in Latimeria chalumnae
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLACG00000001688Protein CLEC16A (365 aa)    
Predicted Functional Partners:
CLEC16A
C-type lectin domain family 16, member A (610 aa)
 
            0.636
VPS39
Vacuolar protein sorting 39 homolog (S. cerevisiae) (875 aa)
     
   
  0.572
VPS18
Vacuolar protein sorting 18 homolog (S. cerevisiae) (874 aa)
     
   
  0.569
VPS11
Vacuolar protein sorting 11 homolog (S. cerevisiae) (997 aa)
     
   
  0.542
VIPAS39
VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog (491 aa)
     
   
  0.534
RMI2
RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae) (158 aa)
           
  0.530
VPS8
Vacuolar protein sorting 8 homolog (S. cerevisiae) (1312 aa)
     
   
  0.509
TGFBRAP1
Transforming growth factor, beta receptor associated protein 1 (859 aa)
     
   
  0.464
WDTC1
WD and tetratricopeptide repeats 1 (646 aa)
     
        0.454
RAB7B
RAB7B, member RAS oncogene family (201 aa)
           
  0.454
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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