STRINGSTRING
ATXN7L1 protein (Latimeria chalumnae) - STRING interaction network
"ATXN7L1" - Ataxin 7-like 1 in Latimeria chalumnae
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATXN7L1Ataxin 7-like 1 (836 aa)    
Predicted Functional Partners:
ATXN7L3
Ataxin 7-like 3; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription (351 aa)
       
  0.961
TADA3
Transcriptional adaptor 3 (312 aa)
       
  0.895
TAF10
TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30kDa (142 aa)
       
  0.894
ENSLACG00000005336
Uncharacterized protein (245 aa)
       
  0.883
ENSLACG00000008252
Uncharacterized protein (251 aa)
       
  0.872
TAF12
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa (217 aa)
       
  0.857
KAT2A
K(lysine) acetyltransferase 2A (740 aa)
     
  0.854
KAT2B
K(lysine) acetyltransferase 2B (793 aa)
     
  0.854
TRRAP
Transformation/transcription domain-associated protein (2877 aa)
     
  0.851
ENSLACG00000005793
Uncharacterized protein (975 aa)
     
  0.851
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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