STRINGSTRING
SSBP3 protein (Latimeria chalumnae) - STRING interaction network
"SSBP3" - Single stranded DNA binding protein 3 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SSBP3Single stranded DNA binding protein 3 (301 aa)    
Predicted Functional Partners:
LDB2
LIM domain binding 2 (248 aa)
     
 
  0.711
LDB1
LIM domain binding 1 (388 aa)
     
 
  0.711
LMO1
LIM domain only 1 (rhombotin 1) (156 aa)
     
 
  0.620
NSMCE1
non-SMC element 1 homolog (S. cerevisiae) (265 aa)
           
  0.457
KANSL1
KAT8 regulatory NSL complex subunit 1 (1112 aa)
           
  0.429
ADAM23
ADAM metallopeptidase domain 23 (676 aa)
           
  0.429
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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