Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSBP3Single stranded DNA binding protein 3. (301 aa)    
Predicted Functional Partners:
LDB1
LIM domain binding 1.
   
 
 0.767
LDB2
LIM domain binding 2.
   
 
 0.767
LMO4
LIM domain only 4b.
    
 
 0.672
LHX4
LIM homeobox 4.
    
 
 0.623
LHX3
LIM homeobox 3.
    
 
 0.623
LHX5
LIM homeobox 5.
    
 
 0.572
LHX1
LIM homeobox 1.
    
 
 0.572
TAL1
TAL bHLH transcription factor 1, erythroid differentiation factor.
    
 
 0.569
LMO2
LIM domain only 2.
    
 
 0.538
INTS3
Integrator complex subunit 3.
    
 
 0.526
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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