STRINGSTRING
SRR protein (Latimeria chalumnae) - STRING interaction network
"SRR" - Serine racemase in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRRSerine racemase (337 aa)    
Predicted Functional Partners:
CBS
Cystathionine-beta-synthase (563 aa)
     
 
  0.926
SHMT2
Serine hydroxymethyltransferase 2 (mitochondrial); Interconversion of serine and glycine (542 aa)
     
 
  0.921
SHMT1
Serine hydroxymethyltransferase 1 (soluble); Interconversion of serine and glycine (474 aa)
     
 
  0.921
SDSL
Serine dehydratase-like (325 aa)
   
   
0.918
AGXT
Alanine-glyoxylate aminotransferase (426 aa)
   
  0.915
PSPH
Phosphoserine phosphatase (248 aa)
     
 
  0.911
RPL11
Ribosomal protein L11 (184 aa)
     
 
  0.846
SPTLC3
Serine palmitoyltransferase, long chain base subunit 3 (551 aa)
     
  0.829
SPTLC2
Serine palmitoyltransferase, long chain base subunit 2 (532 aa)
     
  0.829
SPTLC1
Serine palmitoyltransferase, long chain base subunit 1 (472 aa)
     
  0.829
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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