Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC102361064NTR domain-containing protein. (202 aa)    
Predicted Functional Partners:
LOC102352454
Uncharacterized protein.
     
 0.744
LOC102361240
A2M_recep domain-containing protein.
     
 0.744
MMP9
Matrix metallopeptidase 9.
   
 0.669
ADAM17
ADAM metallopeptidase domain 17.
    
 
 0.593
MMP16
Matrix metallopeptidase 16.
   
 0.573
H3A2Q1_LATCH
ZnMc domain-containing protein.
   
 0.573
MMP21
Matrix metallopeptidase 21; Belongs to the peptidase M10A family.
   
 0.573
LOC102348367
ZnMc domain-containing protein; Belongs to the peptidase M10A family.
   
 0.573
MMP11
Matrix metallopeptidase 11.
   
 0.573
MMP15
Matrix metallopeptidase 15b.
   
 0.573
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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