Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H2ZX10_LATCHUncharacterized protein. (436 aa)    
Predicted Functional Partners:
TBCCD1
TBCC domain containing 1.
      
 0.845
GINS1
GINS complex subunit 1.
      
 0.794
CTCF
CCCTC-binding factor.
      
 0.791
ICMT
Protein-S-isoprenylcysteine O-methyltransferase.
      
 0.790
BCKDHB
Branched chain keto acid dehydrogenase E1 subunit beta.
      
 0.761
TLK2
Tousled like kinase 2.
      
 0.665
TNFRSF9
TNF receptor superfamily member 9.
   
  
 0.664
NMNAT1
Nicotinamide-nucleotide adenylyltransferase.
      
 0.641
H3AI54_LATCH
Uncharacterized protein.
      
 0.641
SERGEF
Secretion regulating guanine nucleotide exchange factor.
      
 0.606
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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