STRINGSTRING
GPBP1 protein (Latimeria chalumnae) - STRING interaction network
"GPBP1" - GC-rich promoter binding protein 1 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GPBP1GC-rich promoter binding protein 1 (496 aa)    
Predicted Functional Partners:
ZCCHC4
Zinc finger, CCHC domain containing 4 (514 aa)
           
  0.602
TNIP3
TNFAIP3 interacting protein 3 (269 aa)
           
  0.597
TMEM69
Transmembrane protein 69 (254 aa)
           
  0.582
ENSLACG00000022351
Uncharacterized protein (266 aa)
           
  0.552
ENSLACG00000008682
Uncharacterized protein (266 aa)
           
  0.552
ENSLACG00000008512
Uncharacterized protein (239 aa)
           
  0.552
SCAMP1
Secretory carrier membrane protein 1 (339 aa)
           
  0.489
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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