Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SMIM8Small integral membrane protein 8. (94 aa)    
Predicted Functional Partners:
TOMM20
Translocase of outer mitochondrial membrane 20.
      
 0.709
RASEF
RAS and EF-hand domain containing.
      
 0.680
MON2
MON2 homolog, regulator of endosome-to-Golgi trafficking.
      
 0.641
RAI14
Retinoic acid induced 14.
      
 0.608
SLC25A15
Solute carrier family 25 member 15; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.608
PIWIL2
Piwi like RNA-mediated gene silencing 2; Belongs to the argonaute family.
      
 0.600
RIOK2
RIO kinase 2.
      
 0.593
LOC102346868
Uncharacterized protein.
      
 0.588
DHTKD1
Dehydrogenase E1 and transketolase domain containing 1.
      
 0.573
TBC1D17
TBC1 domain family member 17.
    
   0.569
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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