STRINGSTRING
ENSLACG00000001758 protein (Latimeria chalumnae) - STRING interaction network
"ENSLACG00000001758" - Uncharacterized protein in Latimeria chalumnae
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLACG00000001758Uncharacterized protein (604 aa)    
Predicted Functional Partners:
REXO2
REX2, RNA exonuclease 2 homolog (S. cerevisiae) (243 aa)
     
  0.894
PCNA
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (260 aa)
     
  0.854
PAN3
PAN3 poly(A) specific ribonuclease subunit homolog (S. cerevisiae); Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA when the poly(A) stretch is bound by poly(A)-binding protein (PABP), which is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3’-5’ exonucleolytic degradation, or deadenlyation-depend [...] (841 aa)
     
  0.849
REXO1
Uncharacterized protein (1185 aa)
     
 
0.804
ENSLACG00000009067
Uncharacterized protein (1185 aa)
     
 
0.804
BRIX1
BRX1, biogenesis of ribosomes, homolog (S. cerevisiae) (345 aa)
     
        0.700
HELZ2
Helicase with zinc finger 2, transcriptional coactivator (2883 aa)
     
  0.663
RRS1
RRS1 ribosome biogenesis regulator homolog (S. cerevisiae) (329 aa)
     
      0.645
HIVEP1
Human immunodeficiency virus type I enhancer binding protein 1 (2614 aa)
     
  0.620
CNOT6L
CCR4-NOT transcription complex, subunit 6-like (553 aa)
     
 
  0.603
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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