Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
REXO5RNA exonuclease 5. (604 aa)    
Predicted Functional Partners:
REXO2
RNA exonuclease 2.
   
 0.948
LOC102357993
Exonuclease domain-containing protein.
     
0.902
REXO1
RNA exonuclease 1 homolog.
     
0.902
MTREX
Mtr4 exosome RNA helicase.
   
  
 0.803
ALPK1
Alpha kinase 1.
  
   
 0.667
RBM7
RRM domain-containing protein.
      
 0.660
ZCCHC4
Zinc finger CCHC-type containing 4.
      
 0.648
ZCCHC8
Zinc finger CCHC-type containing 8.
   
  
 0.646
B3GNT3
Hexosyltransferase.
      
 0.640
EDC4
Enhancer of mRNA decapping 4.
      
 0.637
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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