STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DHX8DEAH-box helicase 8. (1211 aa)    
Predicted Functional Partners:
CRNKL1
Crooked neck pre-mRNA splicing factor 1.
   
 0.986
CACTIN
Cactin, spliceosome C complex subunit.
    
 0.984
CHERP
Calcium homeostasis endoplasmic reticulum protein.
   
 0.984
CDC40
Cell division cycle 40.
   
 0.980
SLU7
SLU7 homolog, splicing factor.
    
 0.979
RBMX2
RRM domain-containing protein.
   
 0.976
AQR
Aquarius intron-binding spliceosomal factor.
   
 0.975
XAB2
XPA binding protein 2.
   
 0.974
NKAPL
NFKB activating protein like.
   
 0.973
CWC22
CWC22 spliceosome associated protein homolog.
   
 0.963
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.