Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADGBCalpain catalytic domain-containing protein; Belongs to the peptidase C2 family. (541 aa)    
Predicted Functional Partners:
CYGB
Cytoglobin; Belongs to the globin family.
   
 
 0.911
MB
Myoglobin; Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.
   
 
 0.894
LOC102346357
Myoglobin; Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.
   
 
 0.856
ALAD
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
      
 0.717
SAMD5
Sterile alpha motif domain containing 5.
      
 0.713
H2ZW61_LATCH
Uncharacterized protein.
    
 0.697
UROD
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
      
 0.691
LOC102362574
X globin; Belongs to the globin family.
   
 
 0.686
FOLH1B
Folate hydrolase 1.
      
 0.686
IQCA1
IQ motif containing with AAA domain 1.
   
 
 0.650
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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