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STRINGSTRING
ENSLACG00000001795 protein (Latimeria chalumnae) - STRING interaction network
"ENSLACG00000001795" - Selenoprotein H in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLACG00000001795Selenoprotein H (112 aa)    
Predicted Functional Partners:
ENSLACG00000004350
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (103 aa)
 
 
 
  0.951
H2AFV
H2A histone family, member V (149 aa)
 
 
 
  0.949
BPTF
Bromodomain PHD finger transcription factor (3013 aa)
       
 
  0.936
KDM1A
Lysine (K)-specific demethylase 1A (820 aa)
     
 
  0.935
H2AFY
Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes (370 aa)
 
 
 
  0.930
HIST2H2AB
Histone cluster 2, H2ab (135 aa)
 
 
 
  0.909
ENSLACG00000002753
Histone H2A (126 aa)
 
 
 
  0.909
CBX1
Chromobox homolog 1 (213 aa)
     
 
  0.907
CBX3
Chromobox homolog 3 (140 aa)
     
 
  0.903
RCOR1
Uncharacterized protein; REST corepressor 1 (272 aa)
       
 
  0.903
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, Latimeria chalumnae, coelacanth
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