Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FOXF2Forkhead box F2a. (379 aa)    
Predicted Functional Partners:
TBX4
T-box transcription factor 4.
     
 0.686
GATA6
GATA binding protein 6.
   
 0.674
NKX3-2
NK3 homeobox 2.
   
 0.660
HOXB6
Homeobox B6.
   
 0.636
BARX1
BARX homeobox 1.
    
 0.603
GATA4
GATA binding protein 4.
   
 0.565
GATA5
GATA binding protein 5.
   
 0.565
CPA1
Carboxypeptidase A1.
      
 0.521
NKX2-5
NK2 homeobox 5.
    
 0.520
BMP2
Bone morphogenetic protein 2.
     
 0.519
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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