Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HABP2Hyaluronan binding protein 2. (480 aa)    
Predicted Functional Partners:
WDR90
WD repeat domain 90.
   
 0.818
LOC102354290
Uncharacterized protein.
    
 0.810
SERPINE3
Serpin family E member 3; Belongs to the serpin family.
   
 0.794
SERPINI1
Serpin family I member 1; Belongs to the serpin family.
   
 0.783
SERPINE2
Serpin family E member 2; Belongs to the serpin family.
   
 0.731
FGB
Fibrinogen beta chain.
   
 0.699
FGG
Fibrinogen gamma chain.
   
 0.691
FGA
Fibrinogen alpha chain.
   
 0.685
TUBB3
G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the tubulin family.
    
 0.628
TUBB1
Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.
    
 0.628
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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