STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102353403Si:dkey-225n22.4. (405 aa)    
Predicted Functional Partners:
H3AEE8_LATCH
Uncharacterized protein.
 
      0.768
COL23A1
Uncharacterized protein.
 
      0.594
COL25A1-2
Uncharacterized protein.
      
 0.573
COL25A1
Collagen type XXV alpha 1 chain.
      
 0.573
MARCO
SRCR domain-containing protein.
 
      0.533
COL9A3
Collagen type IX alpha 3 chain.
 
      0.431
H3ATS1_LATCH
Uncharacterized protein.
 
  
 0.422
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.