STRINGSTRING
ITGA1 protein (Latimeria chalumnae) - STRING interaction network
"ITGA1" - Integrin, alpha 1 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ITGA1Integrin, alpha 1 (1185 aa)    
Predicted Functional Partners:
ENSLACG00000001067
Integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) (822 aa)
       
  0.935
COL4A1
Collagen, type IV, alpha 1 (1669 aa)
     
  0.907
PXN
Paxillin (1112 aa)
         
  0.905
TLN2
Talin 2 (1962 aa)
       
    0.890
TLN1
Talin 1 (2546 aa)
       
    0.890
ITGB7
Integrin, beta 7 (778 aa)
       
  0.887
ITGB5
Integrin, beta 5 (697 aa)
       
  0.887
ENSLACG00000009401
Integrin beta (769 aa)
       
  0.887
ITGB6
Integrin, beta 6 (675 aa)
       
  0.884
COL4A2
Collagen, type IV, alpha 2 (1651 aa)
     
  0.879
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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