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STRINGSTRING
DDR1 protein (Latimeria chalumnae) - STRING interaction network
"DDR1" - Discoidin domain receptor tyrosine kinase 1 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDR1Discoidin domain receptor tyrosine kinase 1 (964 aa)    
Predicted Functional Partners:
NT5M
annotation not available (242 aa)
           
  0.636
APOM
Apolipoprotein M (194 aa)
           
  0.548
CCNJ
Cyclin J; Belongs to the cyclin family (386 aa)
           
  0.545
ITGA2
Integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) (1129 aa)
     
   
  0.539
COL5A1
Collagen, type V, alpha 1 (1742 aa)
     
 
  0.539
KDM8
Lysine (K)-specific demethylase 8 (407 aa)
           
  0.521
SLC16A8
Solute carrier family 16 (monocarboxylate transporter), member 8 (513 aa)
     
   
  0.470
LIPC
Lipase, hepatic (503 aa)
           
  0.456
RAB5A
RAB5A, member RAS oncogene family, b (230 aa)
           
  0.454
PPIL3
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (185 aa)
           
  0.444
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, Latimeria chalumnae, coelacanth
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