STRINGSTRING
TTF1 protein (Latimeria chalumnae) - STRING interaction network
"TTF1" - Transcription termination factor, RNA polymerase I in Latimeria chalumnae
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TTF1Transcription termination factor, RNA polymerase I (849 aa)    
Predicted Functional Partners:
DHX8
DEAH (Asp-Glu-Ala-His) box polypeptide 8 (1211 aa)
     
  0.963
PPIE
Peptidylprolyl isomerase E (cyclophilin E); PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (302 aa)
     
  0.912
ASH1L
Ash1 (absent, small, or homeotic)-like (Drosophila) (925 aa)
     
  0.863
PLRG1
Pleiotropic regulator 1 (514 aa)
     
  0.857
CRNKL1
Crooked neck pre-mRNA splicing factor-like 1 (Drosophila) (684 aa)
     
  0.845
PRPF19
PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae) (504 aa)
     
  0.841
BCAS2
Breast carcinoma amplified sequence 2 (248 aa)
       
  0.829
PRPF8
PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae) (2213 aa)
     
  0.827
SF3B1
Splicing factor 3b, subunit 1, 155kDa (1308 aa)
     
  0.823
XAB2
XPA binding protein 2 (848 aa)
     
  0.818
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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