STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL1A2Collagen type I alpha 2 chain. (1367 aa)    
Predicted Functional Partners:
SDC4
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
     
  0.900
ITGA3
Integrin subunit alpha 3; Belongs to the integrin alpha chain family.
   
 0.710
ITGA6
Integrin subunit alpha 6; Belongs to the integrin alpha chain family.
    
 0.697
ITGB6
Integrin beta; Belongs to the integrin beta chain family.
    
 0.696
ITGB1
Integrin beta; Belongs to the integrin beta chain family.
   
 0.696
LOC102349081
Integrin beta; Belongs to the integrin beta chain family.
   
 0.696
ITGB7
Integrin beta; Belongs to the integrin beta chain family.
   
 0.696
ITGAV
Integrin_alpha2 domain-containing protein.
   
 0.695
ITGA8
Integrin subunit alpha 8; Belongs to the integrin alpha chain family.
    
 0.692
ITGA2
Integrin subunit alpha 2; Belongs to the integrin alpha chain family.
   
 0.689
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.