Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRDM8PR/SET domain 8. (576 aa)    
Predicted Functional Partners:
BHLHE22
Basic helix-loop-helix family member e22.
   
 
 0.734
H3AMY7_LATCH
Uncharacterized protein.
    
 0.630
TCFL5
Transcription factor like 5.
      
 0.572
PRDM6
PR/SET domain 6.
      
 0.562
PRDM15
PR/SET domain 15.
    
 0.558
PRDM5
Zinc finger protein.
    
 0.542
PRDM4
PR/SET domain 4.
    
 0.516
PRDM10
PR/SET domain 10.
    
 0.486
SETD1B
SET domain containing 1B, histone lysine methyltransferase.
    
 0.471
PRDM11
SET domain-containing protein.
      
 0.467
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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