STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRDM8PR/SET domain 8. (576 aa)    
Predicted Functional Partners:
PRDM5
Zinc finger protein.
    
 
 0.522
PRDM6
PR/SET domain 6.
      
 0.516
BHLHE22
Basic helix-loop-helix family member e22.
   
  
 0.484
PRDM15
PR/SET domain 15.
    
 
 0.456
SETMAR
SET domain and mariner transposase fusion gene.
    
 0.446
NSD2
Nuclear receptor binding SET domain protein 2.
    
 0.443
NSD3
Nuclear receptor binding SET domain protein 3.
    
 0.442
PRDM2
PR/SET domain 2.
      
 0.437
PRDM4
PR/SET domain 4.
    
 
 0.432
NSD1
Nuclear receptor binding SET domain protein 1.
    
 0.432
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.