STRINGSTRING
PRDM8 protein (Latimeria chalumnae) - STRING interaction network
"PRDM8" - PR domain containing 8 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRDM8PR domain containing 8 (576 aa)    
Predicted Functional Partners:
KDM6B
Lysine (K)-specific demethylase 6B (1638 aa)
     
  0.772
KDM6A
Lysine (K)-specific demethylase 6A (1452 aa)
     
  0.772
UBA52
Uncharacterized protein (128 aa)
     
  0.725
ACACA
acetyl-CoA carboxylase alpha (2312 aa)
     
 
  0.718
ACACB
acetyl-CoA carboxylase beta (2311 aa)
     
 
  0.718
HDAC1
Histone deacetylase 1 (484 aa)
       
  0.714
HDAC8
Histone deacetylase 8 (379 aa)
       
  0.714
HDAC3
Histone deacetylase 3 (428 aa)
       
  0.714
NUP133
Nucleoporin 133kDa (1421 aa)
     
  0.696
WDR90
WD repeat domain 90 (1846 aa)
     
  0.689
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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