Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VPS50VPS50 subunit of EARP/GARPII complex. (964 aa)    
Predicted Functional Partners:
VPS51
VPS51 subunit of GARP complex.
    
 0.993
VPS53
VPS53 subunit of GARP complex.
   
 
 0.987
VPS52
VPS52 subunit of GARP complex.
   
 
 0.987
VPS54
VPS54 subunit of GARP complex.
    
 
 0.987
EIPR1
EARP complex and GARP complex interacting protein 1.
    
 
 0.986
SNAP29
Synaptosome associated protein 29.
    
   0.895
H2ZU76_LATCH
Uncharacterized protein.
      
 0.641
HEPACAM2
HEPACAM family member 2.
      
 0.641
CCDC186
Coiled-coil domain containing 186.
      
 0.641
RBM26
RNA binding motif protein 26.
      
 0.641
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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