STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FAM3AFamily with sequence similarity 3 member A. (227 aa)    
Predicted Functional Partners:
B3GALNT2
Hexosyltransferase.
    
 
 0.746
LARGE1
LARGE xylosyl- and glucuronyltransferase 1.
      
 0.714
CCDC22
Coiled-coil domain containing 22.
      
 0.697
RXYLT1
Ribitol xylosyltransferase 1.
    
 
 0.612
GMPPB
GDP-mannose pyrophosphorylase B.
      
 0.600
DPM1
Dolichol-phosphate mannosyltransferase subunit 1; Transfers mannose from GDP-mannose to dolichol monophosphate to form dolichol phosphate mannose (Dol-P-Man) which is the mannosyl donor in pathways leading to N-glycosylation, glycosyl phosphatidylinositol membrane anchoring, and O-mannosylation of proteins.
      
 0.597
DOLK
Dolichol kinase.
   
  
 0.585
H3AFZ1_LATCH
Peptidase S72 domain-containing protein.
     
 0.571
DAG1
Dystroglycan 1.
     
 0.571
POMT1
Protein O-mannosyltransferase 1.
      
 0.564
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.