STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102347065Uncharacterized protein; Belongs to the peptidase C2 family. (578 aa)    
Predicted Functional Partners:
CAPNS1
Calpain small subunit 1.
   
0.869
LOC102356340
Uncharacterized protein.
   
 0.847
ITSN2
Intersectin 2.
   
 
 0.636
LRGUK
Leucine rich repeats and guanylate kinase domain containing.
   
 
 0.505
PDCD6
Programmed cell death 6.
   
 0.469
PEF1
Penta-EF-hand domain containing 1.
   
 0.469
LOC102351466
Uncharacterized protein.
   
0.460
GCA
Grancalcin.
   
0.460
RILPL1
Rab interacting lysosomal protein like 1.
      
 0.418
DLGAP4
DLG associated protein 4.
      
 0.406
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.