Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC102367663Achaete-scute family bHLH transcription factor 1b. (177 aa)    
Predicted Functional Partners:
TCF4
Transcription factor 4.
   
 0.766
TCF12
Transcription factor 12.
   
 0.766
TCF3
Transcription factor 3.
   
 0.766
ID4
Inhibitor of DNA binding 4, HLH protein.
    
 0.749
LOC102354037
Hairy-related 8.2.
   
 0.635
HES1
Hes family bHLH transcription factor 1.
   
 0.635
HES4
Hes family bHLH transcription factor 4.
   
 0.635
LRIG1
Leucine rich repeats and immunoglobulin like domains 1.
      
 0.587
LOC102352539
Uncharacterized protein.
    
 0.528
HES2
Hes family bHLH transcription factor 2.
   
 0.528
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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