STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTPRZ1Protein tyrosine phosphatase receptor type Z1. (2273 aa)    
Predicted Functional Partners:
PTN
Pleiotrophin.
   
 0.954
CNTN1
Contactin 1.
   
 0.935
MDK
Midkine.
    
 0.728
H3A9N1_LATCH
Brevican.
   
 0.725
ACAN
Aggrecan.
    
 0.717
H3B6I2_LATCH
Uncharacterized protein.
    
 0.715
VCAN
Uncharacterized protein.
   
 0.713
NCAN
Uncharacterized protein.
   
 
 0.707
CNTN2
Contactin 2.
   
 0.647
APOB
Apolipoprotein B.
    
 0.635
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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