Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PTPRZ1Protein tyrosine phosphatase receptor type Z1. (2273 aa)    
Predicted Functional Partners:
PTN
Pleiotrophin.
   
 0.980
H3A9N1_LATCH
Brevican.
   
 0.942
CNTN1
Contactin 1.
   
 
 0.935
TNC
Tenascin C.
   
 0.934
LOC102348724
C2 domain-containing protein.
      
 0.930
NCAN
Uncharacterized protein.
   
 
 0.906
APOB
Apolipoprotein B.
    
 0.852
H3AM01_LATCH
Integrin beta; Belongs to the integrin beta chain family.
    
 0.791
ITGAV
Integrin_alpha2 domain-containing protein.
    
  0.760
NFASC
Neurofascin.
   
 
 0.705
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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