STRINGSTRING
CTDP1 protein (Latimeria chalumnae) - STRING interaction network
"CTDP1" - CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTDP1CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 (846 aa)    
Predicted Functional Partners:
GTF2F1
General transcription factor IIF, polypeptide 1, 74kDa (525 aa)
     
  0.985
POLR2A
Polymerase (RNA) II (DNA directed) polypeptide A, 220kDa; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1920 aa)
     
  0.969
POLR3A
Polymerase (RNA) III (DNA directed) polypeptide A, 155kDa; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1355 aa)
     
  0.964
POLR2G
Polymerase (RNA) II (DNA directed) polypeptide G (172 aa)
     
  0.960
UBXN7
UBX domain protein 7 (505 aa)
     
  0.952
POLR2C
Polymerase (RNA) II (DNA directed) polypeptide C, 33kDa (323 aa)
     
  0.948
POLR2B
Polymerase (RNA) II (DNA directed) polypeptide B, 140kDa; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1176 aa)
     
  0.946
GTF2B
General transcription factor IIB (316 aa)
     
 
  0.901
ENSLACG00000022567
Uncharacterized protein (105 aa)
     
  0.893
POLR2D
Polymerase (RNA) II (DNA directed) polypeptide D (142 aa)
     
  0.887
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
Server load: low (9%) [HD]